IL_9B0S_446

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_446 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3092

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9B0S|1|l5|U|4885
9B0S|1|l5|C|4886
9B0S|1|l5|C|4887
9B0S|1|l5|U|4888
9B0S|1|l5|G|4889
*
9B0S|1|l5|C|4930
9B0S|1|l5|G|4931
9B0S|1|l5|U|4932
9B0S|1|l5|C|4933
9B0S|1|l5|A|4934

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lE

Large ribosomal subunit protein eL6

Chain lM

60S ribosomal protein L14

Chain lO

60S ribosomal protein L13a