IL_9B0S_490

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

9B0S|1|s2|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_490 not in the Motif Atlas

Homologous match to IL_8P9A_396

Geometric discrepancy: 0.1414

The information below is about IL_8P9A_396

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9B0S|1|s2|U|487
9B0S|1|s2|U|488
9B0S|1|s2|A|489
*
9B0S|1|s2|U|511
9B0S|1|s2|A|512

Current chains

Chain s2

18S rRNA [Homo sapiens]

Nearby chains

Chain cB

Elongation factor 2

Chain sE

Small ribosomal subunit protein eS4, X isoform

Chain sJ

40S ribosomal protein S9

Chain sY

40S ribosomal protein S24