IL_9B0S_502

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_502 not in the Motif Atlas

Homologous match to IL_8CRE_425

Geometric discrepancy: 0.085

The information below is about IL_8CRE_425

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9B0S|1|s2|G|673
9B0S|1|s2|C|674
9B0S|1|s2|U|675
*
9B0S|1|s2|A|1030
9B0S|1|s2|A|1031
9B0S|1|s2|C|1032

Current chains

Chain s2

18S rRNA [Homo sapiens]

Nearby chains

Chain l5

Large subunit ribosomal RNA; LSU rRNA

Chain sN

40S ribosomal protein S13