IL_9B0S_517
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 9B0S|1|s2|C|1153, 9B0S|1|s2|U|1155, 9B0S|1|s2|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_517 not in the Motif Atlas
- Homologous match to IL_8P9A_425
- Geometric discrepancy: 0.13
- The information below is about IL_8P9A_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9B0S|1|s2|C|1091
9B0S|1|s2|G|1092
9B0S|1|s2|A|1093
*
9B0S|1|s2|U|1152
9B0S|1|s2|C|1153
9B0S|1|s2|U|1154
9B0S|1|s2|U|1155
9B0S|1|s2|U|1156
9B0S|1|s2|G|1157
9B0S|1|s2|G|1158
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain sC
- 40S ribosomal protein S2
- Chain sL
- 40S ribosomal protein S11
- Chain sN
- 40S ribosomal protein S13
- Chain sW
- 40S ribosomal protein S15a
- Chain sX
- 40S ribosomal protein S23
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