IL_9B0S_523

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

9B0S|1|s2|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_523 not in the Motif Atlas

Homologous match to IL_8CRE_444

Geometric discrepancy: 0.2126

The information below is about IL_8CRE_444

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

9B0S|1|s2|G|1206
9B0S|1|s2|G|1207
9B0S|1|s2|A|1208
*
9B0S|1|s2|U|1691
9B0S|1|s2|U|1692

Current chains

Chain s2

18S rRNA [Homo sapiens]

Nearby chains

Chain sa

40S ribosomal protein S26