IL_9B0S_534
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 9B0S|1|s2|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_534 not in the Motif Atlas
- Homologous match to IL_8CRE_455
- Geometric discrepancy: 0.1038
- The information below is about IL_8CRE_455
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 134
Unit IDs
9B0S|1|s2|C|1337
9B0S|1|s2|G|1338
*
9B0S|1|s2|C|1488
9B0S|1|s2|A|1489
9B0S|1|s2|G|1490
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain aP
- Transfer RNA; tRNA
- Chain sC
- 40S ribosomal protein S2
- Chain sD
- Small ribosomal subunit protein uS3
- Chain sQ
- Small ribosomal subunit protein uS9
- Chain sU
- 40S ribosomal protein S20
- Chain sd
- 40S ribosomal protein S29
Coloring options: