IL_9B0S_535
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGG*CGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_535 not in the Motif Atlas
- Homologous match to IL_8P9A_442
- Geometric discrepancy: 0.0864
- The information below is about IL_8P9A_442
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
9B0S|1|s2|U|1347
9B0S|1|s2|G|1348
9B0S|1|s2|G|1349
*
9B0S|1|s2|C|1380
9B0S|1|s2|G|1381
9B0S|1|s2|A|1382
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain sA
- 40S ribosomal protein SA
- Chain sC
- 40S ribosomal protein S2
- Chain sD
- Small ribosomal subunit protein uS3
- Chain sR
- 40S ribosomal protein S17
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