3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GCUCAGCGUG*CCGUUGAACCC
Length
21 nucleotides
Bulged bases
9B0S|1|s2|U|1585, 9B0S|1|s2|G|1587
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9B0S|1|s2|G|1541
9B0S|1|s2|C|1542
9B0S|1|s2|U|1543
9B0S|1|s2|C|1544
9B0S|1|s2|A|1545
9B0S|1|s2|G|1546
9B0S|1|s2|C|1547
9B0S|1|s2|G|1548
9B0S|1|s2|U|1549
9B0S|1|s2|G|1550
*
9B0S|1|s2|C|1582
9B0S|1|s2|C|1583
9B0S|1|s2|G|1584
9B0S|1|s2|U|1585
9B0S|1|s2|U|1586
9B0S|1|s2|G|1587
9B0S|1|s2|A|1588
9B0S|1|s2|A|1589
9B0S|1|s2|C|1590
9B0S|1|s2|C|1591
9B0S|1|s2|C|1592

Current chains

Chain s2
18S rRNA [Homo sapiens]

Nearby chains

Chain sD
Small ribosomal subunit protein uS3
Chain sF
40S ribosomal protein S5
Chain sQ
Small ribosomal subunit protein uS9
Chain sT
40S ribosomal protein S19
Chain sU
40S ribosomal protein S20
Chain sZ
Small ribosomal subunit protein eS25
Chain sd
40S ribosomal protein S29

Coloring options:

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