IL_9B0S_551
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_551 not in the Motif Atlas
- Homologous match to IL_8P9A_457
- Geometric discrepancy: 0.1075
- The information below is about IL_8P9A_457
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.1
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
9B0S|1|s2|C|1717
9B0S|1|s2|G|1718
9B0S|1|s2|A|1719
9B0S|1|s2|U|1720
*
9B0S|1|s2|A|1813
9B0S|1|s2|G|1814
9B0S|1|s2|A|1815
9B0S|1|s2|G|1816
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain l5
- Large subunit ribosomal RNA; LSU rRNA
- Chain ln
- 60S ribosomal protein L41
- Chain sX
- 40S ribosomal protein S23
Coloring options: