IL_9B0S_552
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUG*CUA
- Length
- 6 nucleotides
- Bulged bases
- 9B0S|1|s2|U|1721, 9B0S|1|s2|U|1812
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_552 not in the Motif Atlas
- Homologous match to IL_8P9A_458
- Geometric discrepancy: 0.2121
- The information below is about IL_8P9A_458
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 129
Unit IDs
9B0S|1|s2|U|1720
9B0S|1|s2|U|1721
9B0S|1|s2|G|1722
*
9B0S|1|s2|C|1811
9B0S|1|s2|U|1812
9B0S|1|s2|A|1813
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain l5
- Large subunit ribosomal RNA; LSU rRNA
- Chain lV
- 60S ribosomal protein L23
- Chain ln
- 60S ribosomal protein L41
- Chain sX
- 40S ribosomal protein S23
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