IL_9B0W_007
3D structure
- PDB id
- 9B0W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human eEF2-A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0W_007 not in the Motif Atlas
- Homologous match to IL_8CRE_006
- Geometric discrepancy: 0.0875
- The information below is about IL_8CRE_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_65594.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9B0W|1|L5|C|81
9B0W|1|L5|U|82
9B0W|1|L5|C|83
9B0W|1|L5|A|84
9B0W|1|L5|G|85
9B0W|1|L5|U|86
9B0W|1|L5|A|87
9B0W|1|L5|A|88
*
9B0W|1|L5|U|96
9B0W|1|L5|G|97
9B0W|1|L5|A|98
9B0W|1|L5|A|99
9B0W|1|L5|C|100
9B0W|1|L5|A|101
9B0W|1|L5|G|102
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain La
- 60S ribosomal protein L27a
Coloring options: