Motif IL_65594.1 Version IL_65594.1 of this group appears in releases 3.95 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 3-13 | 4-12 | 5-6 | 6-11 | 7-10 | 8-9 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_235 | 8P9A | 0.0000 | 0 | 8x7 Sarcin-Ricin; G-bulge | AR | LSU rRNA | C | 82 | U | 83 | U | 84 | A | 85 | G | 86 | U | 87 | A | 88 | A | 89 | * | U | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | G | 103 | cWW | tSW | tHH | cSH | tWH | tHS | cWW |
| 2 | IL_8CRE_006 | 8CRE | 0.0779 | 0 | 8x7 Sarcin-Ricin; G-bulge | 1 | LSU rRNA | C | 81 | U | 82 | C | 83 | A | 84 | G | 85 | U | 86 | A | 87 | G | 88 | * | U | 96 | G | 97 | A | 98 | A | 99 | G | 100 | C | 101 | G | 102 | cWW | tSW | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGUAA*UGAAGCG | 1 |
| CUCAGUAG*UGAAGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGUA*GAAGC | 1 |
| UCAGUA*GAAGC | 1 |
- Annotations
-
- 8x7 Sarcin-Ricin; G-bulge (2)
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: