IL_9B0W_031

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

9B0W|1|L5|A|943, 9B0W|1|L5|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_031 not in the Motif Atlas

Geometric match to IL_7Q80_003

Geometric discrepancy: 0.2366

The information below is about IL_7Q80_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

9B0W|1|L5|A|723
9B0W|1|L5|C|724
*
9B0W|1|L5|G|942
9B0W|1|L5|A|943
9B0W|1|L5|A|944
9B0W|1|L5|U|945

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7