3D structure

PDB id
9B0W (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human eEF2-A/P-P/E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
GGAUC*GCGCAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B0W_054 not in the Motif Atlas
Geometric match to IL_3BBM_001
Geometric discrepancy: 0.364
The information below is about IL_3BBM_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47352.1
Basepair signature
cWW-cWW-L-R-tHS-L-cWW
Number of instances in this motif group
4

Unit IDs

9B0W|1|L5|G|1425
9B0W|1|L5|G|1426
9B0W|1|L5|A|1427
9B0W|1|L5|U|1428
9B0W|1|L5|C|1429
*
9B0W|1|L5|G|1455
9B0W|1|L5|C|1456
9B0W|1|L5|G|1457
9B0W|1|L5|C|1458
9B0W|1|L5|A|1459
9B0W|1|L5|C|1460

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LQ
60S ribosomal protein L18
Chain Lb
60S ribosomal protein L29

Coloring options:


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