IL_9B0W_124

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

9B0W|1|L5|A|3711, 9B0W|1|L5|A|3712

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_124 not in the Motif Atlas

Geometric match to IL_8P9A_444

Geometric discrepancy: 0.322

The information below is about IL_8P9A_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9B0W|1|L5|G|3710
9B0W|1|L5|A|3711
9B0W|1|L5|A|3712
9B0W|1|L5|U|3713
9B0W|1|L5|G|3714
*
9B0W|1|L5|C|3739
9B0W|1|L5|G|3740
9B0W|1|L5|C|3741

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain PE

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA