IL_9B0W_160

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

9B0W|1|L5|A|4656, 9B0W|1|L5|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_160 not in the Motif Atlas

Homologous match to IL_8P9A_347

Geometric discrepancy: 0.3111

The information below is about IL_8P9A_347

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0W|1|L5|U|4641
9B0W|1|L5|U|4642
*
9B0W|1|L5|A|4655
9B0W|1|L5|A|4656
9B0W|1|L5|U|4657
9B0W|1|L5|G|4658

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31