IL_9B0W_258

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_258 not in the Motif Atlas

Homologous match to IL_8P9A_442

Geometric discrepancy: 0.0981

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

9B0W|1|S2|U|1347
9B0W|1|S2|G|1348
9B0W|1|S2|G|1349
*
9B0W|1|S2|C|1380
9B0W|1|S2|G|1381
9B0W|1|S2|A|1382

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SC

40S ribosomal protein S2

Chain SD

Small ribosomal subunit protein uS3

Chain SR

40S ribosomal protein S17