IL_9B11_042

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GAC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B11_042 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1736

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9B11|1|L5|G|1094
9B11|1|L5|A|1095
9B11|1|L5|C|1096
*
9B11|1|L5|G|1199
9B11|1|L5|G|1200
9B11|1|L5|U|1201

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21