IL_9B11_045

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

9B11|1|L5|G|1266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B11_045 not in the Motif Atlas

Geometric match to IL_8CRE_048

Geometric discrepancy: 0.2518

The information below is about IL_8CRE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

9B11|1|L5|G|1244
9B11|1|L5|C|1245
*
9B11|1|L5|G|1265
9B11|1|L5|G|1266
9B11|1|L5|C|1267

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L29