IL_9B11_064

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

9B11|1|L5|C|1698, 9B11|1|L5|C|1702, 9B11|1|L5|C|1707, 9B11|1|L5|G|1708, 9B11|1|L5|C|1718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B11|1|L5|C|1694
9B11|1|L5|U|1695
9B11|1|L5|C|1696
9B11|1|L5|G|1697
9B11|1|L5|C|1698
9B11|1|L5|A|1699
9B11|1|L5|G|1700
9B11|1|L5|A|1701
9B11|1|L5|C|1702
9B11|1|L5|C|1703
9B11|1|L5|C|1704
9B11|1|L5|G|1705
9B11|1|L5|A|1706
9B11|1|L5|C|1707
9B11|1|L5|G|1708
9B11|1|L5|C|1709
9B11|1|L5|C|1714
9B11|1|L5|C|1715
9B11|1|L5|G|1716
9B11|1|L5|C|1717
9B11|1|L5|C|1718
9B11|1|L5|A|1719
9B11|1|L5|C|1720
9B11|1|L5|G|1721
*
9B11|1|L5|C|1841
9B11|1|L5|G|1842

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29