3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
AA*UUU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_067 not in the Motif Atlas
Homologous match to IL_8CRE_042
Geometric discrepancy: 0.076
The information below is about IL_8CRE_042
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_51454.2
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
44

Unit IDs

9B11|1|L5|A|1737
9B11|1|L5|A|1738
*
9B11|1|L5|U|1790
9B11|1|L5|U|1791
9B11|1|L5|U|1792

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LD
Large ribosomal subunit protein uL18
Chain LI
60S ribosomal protein L10-like
Chain LT
60S ribosomal protein L21

Coloring options:


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