3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CAGUCGAGAGUGGACGGGAGCGGC*GAGCCCCGCGGACGCUACG
Length
43 nucleotides
Bulged bases
9B11|1|L5|G|2096, 9B11|1|L5|U|2097, 9B11|1|L5|C|2255, 9B11|1|L5|C|2266, 9B11|1|L5|U|2267, 9B11|1|L5|C|2269
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9B11|1|L5|C|2087
9B11|1|L5|A|2088
9B11|1|L5|G|2089
9B11|1|L5|U|2090
9B11|1|L5|C|2091
9B11|1|L5|G|2092
9B11|1|L5|A|2093
9B11|1|L5|G|2094
9B11|1|L5|A|2095
9B11|1|L5|G|2096
9B11|1|L5|U|2097
9B11|1|L5|G|2098
9B11|1|L5|G|2099
9B11|1|L5|A|2100
9B11|1|L5|C|2101
9B11|1|L5|G|2102
9B11|1|L5|G|2103
9B11|1|L5|G|2104
9B11|1|L5|A|2105
9B11|1|L5|G|2106
9B11|1|L5|C|2107
9B11|1|L5|G|2108
9B11|1|L5|G|2109
9B11|1|L5|C|2110
*
9B11|1|L5|G|2252
9B11|1|L5|A|2253
9B11|1|L5|G|2254
9B11|1|L5|C|2255
9B11|1|L5|C|2256
9B11|1|L5|C|2257
9B11|1|L5|C|2258
9B11|1|L5|G|2259
9B11|1|L5|C|2260
9B11|1|L5|G|2261
9B11|1|L5|G|2262
9B11|1|L5|A|2263
9B11|1|L5|C|2264
9B11|1|L5|G|2265
9B11|1|L5|C|2266
9B11|1|L5|U|2267
9B11|1|L5|A|2268
9B11|1|L5|C|2269
9B11|1|L5|G|2270

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LE
60S ribosomal protein L6
Chain LF
60S ribosomal protein L7
Chain LQ
60S ribosomal protein L18
Chain Lb
60S ribosomal protein L29
Chain Lr
60S ribosomal protein L28

Coloring options:

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