3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CGAUC*GGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_099 not in the Motif Atlas
Homologous match to IL_8P9A_295
Geometric discrepancy: 0.1892
The information below is about IL_8P9A_295
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_15190.1
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
22

Unit IDs

9B11|1|L5|C|2589
9B11|1|L5|G|2590
9B11|1|L5|A|2591
9B11|1|L5|U|2592
9B11|1|L5|C|2593
*
9B11|1|L5|G|2752
9B11|1|L5|G|2753
9B11|1|L5|G|2754
9B11|1|L5|A|2755
9B11|1|L5|G|2756

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain LZ
60S ribosomal protein L27
Chain Lg
60S ribosomal protein L34

Coloring options:


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