IL_9B11_119

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B11_119 not in the Motif Atlas

Geometric match to IL_8P9A_367

Geometric discrepancy: 0.1642

The information below is about IL_8P9A_367

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

9B11|1|L5|C|3708
9B11|1|L5|U|3709
9B11|1|L5|G|3710
*
9B11|1|L5|C|3741
9B11|1|L5|G|3742

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Et

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain S2

Small subunit ribosomal RNA; SSU rRNA