IL_9B11_124

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9B11|1|L5|A|3785, 9B11|1|L5|C|3791, 9B11|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B11_124 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.0671

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

9B11|1|L5|C|3781
9B11|1|L5|C|3782
9B11|1|L5|A|3783
9B11|1|L5|A|3784
9B11|1|L5|A|3785
9B11|1|L5|U|3786
9B11|1|L5|G|3787
9B11|1|L5|C|3788
9B11|1|L5|C|3789
9B11|1|L5|U|3790
9B11|1|L5|C|3791
9B11|1|L5|G|3792
*
9B11|1|L5|C|3808
9B11|1|L5|G|3809
9B11|1|L5|C|3810
9B11|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA