3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GAA*UACC
Length
7 nucleotides
Bulged bases
9B11|1|L5|A|3901, 9B11|1|L5|C|4560
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_126 not in the Motif Atlas
Homologous match to IL_8CRE_097
Geometric discrepancy: 0.0807
The information below is about IL_8CRE_097
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_83389.2
Basepair signature
cWW-cWW
Number of instances in this motif group
5

Unit IDs

9B11|1|L5|G|3900
9B11|1|L5|A|3901
9B11|1|L5|A|3902
*
9B11|1|L5|U|4558
9B11|1|L5|A|4559
9B11|1|L5|C|4560
9B11|1|L5|C|4561

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LP
60S ribosomal protein L17

Coloring options:


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