IL_9B11_129
3D structure
- PDB id
- 9B11 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human unrotated hibernating without CCDC124 state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- UAG*UGGG
- Length
- 7 nucleotides
- Bulged bases
- 9B11|1|L5|G|4183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B11_129 not in the Motif Atlas
- Homologous match to IL_8CRE_100
- Geometric discrepancy: 0.1111
- The information below is about IL_8CRE_100
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85599.2
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9B11|1|L5|U|3927
9B11|1|L5|A|3928
9B11|1|L5|G|3929
*
9B11|1|L5|U|4181
9B11|1|L5|G|4182
9B11|1|L5|G|4183
9B11|1|L5|G|4184
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Et
- Transfer RNA; tRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain Lo
- 60S ribosomal protein L36a
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