IL_9B11_130

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GACAUGAG*CUGAUCGUU

Length

17 nucleotides

Bulged bases

9B11|1|L5|A|3947, 9B11|1|L5|C|3948, 9B11|1|L5|A|3949

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B11|1|L5|G|3946
9B11|1|L5|A|3947
9B11|1|L5|C|3948
9B11|1|L5|A|3949
9B11|1|L5|U|3950
9B11|1|L5|G|3951
9B11|1|L5|A|3952
9B11|1|L5|G|3953
*
9B11|1|L5|C|4059
9B11|1|L5|U|4060
9B11|1|L5|G|4061
9B11|1|L5|A|4062
9B11|1|L5|U|4063
9B11|1|L5|C|4064
9B11|1|L5|G|4065
9B11|1|L5|U|4066
9B11|1|L5|U|4067

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lz

60S ribosomal protein L10a

Chain SB

40S ribosomal protein S3a