IL_9B11_137
3D structure
- PDB id
- 9B11 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human unrotated hibernating without CCDC124 state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- GG*UCC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B11_137 not in the Motif Atlas
- Homologous match to IL_8P9A_329
- Geometric discrepancy: 0.0835
- The information below is about IL_8P9A_329
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.7
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 40
Unit IDs
9B11|1|L5|G|4400
9B11|1|L5|G|4401
*
9B11|1|L5|U|4442
9B11|1|L5|C|4443
9B11|1|L5|C|4444
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LI
- 60S ribosomal protein L10-like
- Chain Lb
- 60S ribosomal protein L29
Coloring options: