3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_141 not in the Motif Atlas
Homologous match to IL_8P9A_333
Geometric discrepancy: 0.1034
The information below is about IL_8P9A_333
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_87767.1
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
16

Unit IDs

9B11|1|L5|C|4412
9B11|1|L5|C|4413
9B11|1|L5|A|4414
9B11|1|L5|A|4415
9B11|1|L5|G|4416
*
9B11|1|L5|C|4426
9B11|1|L5|G|4427
9B11|1|L5|A|4428
9B11|1|L5|C|4429
9B11|1|L5|G|4430

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LI
60S ribosomal protein L10-like
Chain Lm
Large ribosomal subunit protein eL40

Coloring options:


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