3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CCAU*AGGCG
Length
9 nucleotides
Bulged bases
9B11|1|L5|C|4720
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_151 not in the Motif Atlas
Geometric match to IL_6YML_002
Geometric discrepancy: 0.3385
The information below is about IL_6YML_002
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

9B11|1|L5|C|4582
9B11|1|L5|C|4583
9B11|1|L5|A|4584
9B11|1|L5|U|4585
*
9B11|1|L5|A|4717
9B11|1|L5|G|4718
9B11|1|L5|G|4719
9B11|1|L5|C|4720
9B11|1|L5|G|4721

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LO
60S ribosomal protein L13a

Coloring options:


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