IL_9B11_175

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B11_175 not in the Motif Atlas

Homologous match to IL_8CRE_141

Geometric discrepancy: 0.1718

The information below is about IL_8CRE_141

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9B11|1|L5|A|5014
9B11|1|L5|G|5015
9B11|1|L5|A|5016
9B11|1|L5|G|5017
*
9B11|1|L5|C|5032
9B11|1|L5|G|5033
9B11|1|L5|A|5034
9B11|1|L5|U|5035

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8