3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CAAA*UGACG
Length
9 nucleotides
Bulged bases
9B11|1|S2|A|516
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_186 not in the Motif Atlas
Geometric match to IL_4WF9_016
Geometric discrepancy: 0.3267
The information below is about IL_4WF9_016
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_58355.1
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
44

Unit IDs

9B11|1|S2|C|37
9B11|1|S2|A|38
9B11|1|S2|A|39
9B11|1|S2|A|40
*
9B11|1|S2|U|514
9B11|1|S2|G|515
9B11|1|S2|A|516
9B11|1|S2|C|517
9B11|1|S2|G|518

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SJ
40S ribosomal protein S9

Coloring options:


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