3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GCUCCUCUCCCACUU*AUGCCGAC
Length
23 nucleotides
Bulged bases
9B11|1|S2|C|131, 9B11|1|S2|U|132, 9B11|1|S2|C|133, 9B11|1|S2|C|134, 9B11|1|S2|U|135, 9B11|1|S2|C|136, 9B11|1|S2|U|137, 9B11|1|S2|C|138, 9B11|1|S2|C|139, 9B11|1|S2|C|142, 9B11|1|S2|U|143
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9B11|1|S2|G|130
9B11|1|S2|C|131
9B11|1|S2|U|132
9B11|1|S2|C|133
9B11|1|S2|C|134
9B11|1|S2|U|135
9B11|1|S2|C|136
9B11|1|S2|U|137
9B11|1|S2|C|138
9B11|1|S2|C|139
9B11|1|S2|C|140
9B11|1|S2|A|141
9B11|1|S2|C|142
9B11|1|S2|U|143
9B11|1|S2|U|144
*
9B11|1|S2|A|175
9B11|1|S2|U|176
9B11|1|S2|G|177
9B11|1|S2|C|178
9B11|1|S2|C|179
9B11|1|S2|G|180
9B11|1|S2|A|181
9B11|1|S2|C|182

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SG
40S ribosomal protein S6

Coloring options:

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