3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
UUUCGA*UG
Length
8 nucleotides
Bulged bases
9B11|1|S2|U|368, 9B11|1|S2|C|369
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_205 not in the Motif Atlas
Homologous match to IL_8P9A_392
Geometric discrepancy: 0.1251
The information below is about IL_8P9A_392
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_01372.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

9B11|1|S2|U|366
9B11|1|S2|U|367
9B11|1|S2|U|368
9B11|1|S2|C|369
9B11|1|S2|G|370
9B11|1|S2|A|371
*
9B11|1|S2|U|393
9B11|1|S2|G|394

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain LR
60S ribosomal protein L19
Chain SI
40S ribosomal protein S8
Chain SL
40S ribosomal protein S11

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0733 s