3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CAU*AAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_208 not in the Motif Atlas
Homologous match to IL_8CRE_412
Geometric discrepancy: 0.0468
The information below is about IL_8CRE_412
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42997.3
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
20

Unit IDs

9B11|1|S2|C|459
9B11|1|S2|A|460
9B11|1|S2|U|461
*
9B11|1|S2|A|468
9B11|1|S2|A|469
9B11|1|S2|G|470

Current chains

Chain S2
18S rRNA

Nearby chains

Chain LV
60S ribosomal protein L23
Chain SG
40S ribosomal protein S6
Chain SY
40S ribosomal protein S24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1029 s