3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
UC*GGA
Length
5 nucleotides
Bulged bases
9B11|1|S2|G|507
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_211 not in the Motif Atlas
Homologous match to IL_8P9A_398
Geometric discrepancy: 0.1167
The information below is about IL_8P9A_398
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.13
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

9B11|1|S2|U|495
9B11|1|S2|C|496
*
9B11|1|S2|G|506
9B11|1|S2|G|507
9B11|1|S2|A|508

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SJ
40S ribosomal protein S9
Chain SY
40S ribosomal protein S24

Coloring options:


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