3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GACAGGAUUG*CUCGAUUC
Length
18 nucleotides
Bulged bases
9B11|1|S2|G|1285
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9B11|1|S2|G|1281
9B11|1|S2|A|1282
9B11|1|S2|C|1283
9B11|1|S2|A|1284
9B11|1|S2|G|1285
9B11|1|S2|G|1286
9B11|1|S2|A|1287
9B11|1|S2|U|1288
9B11|1|S2|U|1289
9B11|1|S2|G|1290
*
9B11|1|S2|C|1309
9B11|1|S2|U|1310
9B11|1|S2|C|1311
9B11|1|S2|G|1312
9B11|1|S2|A|1313
9B11|1|S2|U|1314
9B11|1|S2|U|1315
9B11|1|S2|C|1316

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SK
40S ribosomal protein S10
Chain SM
Small ribosomal subunit protein eS12
Chain Sd
40S ribosomal protein S29
Chain Sf
Ubiquitin-40S ribosomal protein S27a

Coloring options:

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