IL_9B24_002

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9B24|1|4|G|2354, 9B24|1|4|U|2355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_002 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.2955

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9B24|1|4|C|2352
9B24|1|4|U|2353
9B24|1|4|G|2354
9B24|1|4|U|2355
9B24|1|4|G|2356
9B24|1|4|A|2357
9B24|1|4|A|2358
9B24|1|4|G|2359
*
9B24|1|4|U|2378
9B24|1|4|G|2379
9B24|1|4|G|2380
9B24|1|4|A|2381
9B24|1|4|G|2382

Current chains

Chain 4

23S rRNA part

Nearby chains