IL_9B24_009

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGAUC*GGG

Length

8 nucleotides

Bulged bases

9B24|1|A|G|126, 9B24|1|A|A|127

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_009 not in the Motif Atlas

Geometric match to IL_4V83_235

Geometric discrepancy: 0.3769

The information below is about IL_4V83_235

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9B24|1|A|U|125
9B24|1|A|G|126
9B24|1|A|A|127
9B24|1|A|U|128
9B24|1|A|C|129
*
9B24|1|A|G|230
9B24|1|A|G|231
9B24|1|A|G|232

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20