IL_9B24_014

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UUGU*AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_014 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.3382

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22002.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9B24|1|A|U|249
9B24|1|A|U|250
9B24|1|A|G|251
9B24|1|A|U|252
*
9B24|1|A|A|274
9B24|1|A|G|275

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain Q

Small ribosomal subunit protein uS17