IL_9B24_028

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

9B24|1|A|A|728

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_028 not in the Motif Atlas

Homologous match to IL_4LFB_028

Geometric discrepancy: 0.4432

The information below is about IL_4LFB_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9B24|1|A|U|637
9B24|1|A|A|638
*
9B24|1|A|U|727
9B24|1|A|A|728
9B24|1|A|A|729

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain O

Small ribosomal subunit protein uS15