IL_9B24_048

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGAUG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_048 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2616

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9B24|1|A|C|1240
9B24|1|A|G|1241
9B24|1|A|A|1242
9B24|1|A|U|1243
9B24|1|A|G|1244
*
9B24|1|A|U|1253
9B24|1|A|G|1254
9B24|1|A|G|1255
9B24|1|A|A|1256
9B24|1|A|G|1257

Current chains

Chain A

RNA (1528-MER)

Nearby chains