IL_9B24_065
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- GGAAGUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B24_065 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.1712
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
9B24|1|Y|G|187
9B24|1|Y|G|188
9B24|1|Y|A|189
9B24|1|Y|A|190
9B24|1|Y|G|191
9B24|1|Y|U|192
9B24|1|Y|G|193
*
9B24|1|Y|C|200
9B24|1|Y|U|201
9B24|1|Y|C|202
9B24|1|Y|A|203
9B24|1|Y|G|204
9B24|1|Y|U|205
9B24|1|Y|A|206
9B24|1|Y|C|207
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain h
- Large ribosomal subunit protein uL15
- Chain t
- Large ribosomal subunit protein bL28
Coloring options: