IL_9B24_075

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UUAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_075 not in the Motif Atlas

Homologous match to IL_9DFE_014

Geometric discrepancy: 0.2033

The information below is about IL_9DFE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9B24|1|Y|U|699
9B24|1|Y|U|700
9B24|1|Y|A|701
9B24|1|Y|A|702
9B24|1|Y|C|703
*
9B24|1|Y|G|712
9B24|1|Y|G|713
9B24|1|Y|U|714
9B24|1|Y|A|715
9B24|1|Y|G|716

Current chains

Chain Y

23S rRNA

Nearby chains

Chain b

Large ribosomal subunit protein uL4

Chain h

Large ribosomal subunit protein uL15