IL_9B24_092

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

9B24|1|Y|C|1113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_092 not in the Motif Atlas

Homologous match to IL_4WF9_035

Geometric discrepancy: 0.2059

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

9B24|1|Y|C|1112
9B24|1|Y|C|1113
9B24|1|Y|G|1114
*
9B24|1|Y|C|1278
9B24|1|Y|G|1279

Current chains

Chain Y

23S rRNA

Nearby chains

Chain f

Large ribosomal subunit protein uL13

Chain m

Large ribosomal subunit protein bL20

Chain n

Large ribosomal subunit protein bL21

Chain w

Large ribosomal subunit protein uL30