IL_9B24_097
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- GGAAAAG*CGAUAAUGUAGCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9B24|1|Y|U|1245, 9B24|1|Y|U|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B24_097 not in the Motif Atlas
- Homologous match to IL_5J7L_281
- Geometric discrepancy: 0.1201
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9B24|1|Y|G|1142
9B24|1|Y|G|1143
9B24|1|Y|A|1144
9B24|1|Y|A|1145
9B24|1|Y|A|1146
9B24|1|Y|A|1147
9B24|1|Y|G|1148
*
9B24|1|Y|C|1242
9B24|1|Y|G|1243
9B24|1|Y|A|1244
9B24|1|Y|U|1245
9B24|1|Y|A|1246
9B24|1|Y|A|1247
9B24|1|Y|U|1248
9B24|1|Y|G|1249
9B24|1|Y|U|1250
9B24|1|Y|A|1251
9B24|1|Y|G|1252
9B24|1|Y|C|1253
9B24|1|Y|G|1254
9B24|1|Y|G|1255
9B24|1|Y|G|1256
9B24|1|Y|G|1257
9B24|1|Y|C|1258
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L36
- Chain U
- 5S ribosomal RNA; 5S rRNA
- Chain a
- Large ribosomal subunit protein uL3
- Chain f
- Large ribosomal subunit protein uL13
- Chain i
- Large ribosomal subunit protein uL16
Coloring options: