IL_9B24_126

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGUAAG*CCCAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_126 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.2123

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9B24|1|Y|U|1937
9B24|1|Y|G|1938
9B24|1|Y|U|1939
9B24|1|Y|A|1940
9B24|1|Y|A|1941
9B24|1|Y|G|1942
*
9B24|1|Y|C|1952
9B24|1|Y|C|1953
9B24|1|Y|C|1954
9B24|1|Y|A|1955
9B24|1|Y|A|1956
9B24|1|Y|G|1957

Current chains

Chain Y

23S rRNA

Nearby chains