IL_9B24_133

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_133 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.2341

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9B24|1|Y|U|2068
9B24|1|Y|U|2069
9B24|1|Y|A|2070
9B24|1|Y|A|2071
9B24|1|Y|G|2072
*
9B24|1|Y|U|2111
9B24|1|Y|U|2112
9B24|1|Y|A|2113
9B24|1|Y|A|2114
9B24|1|Y|G|2115

Current chains

Chain Y

23S rRNA

Nearby chains