IL_9B24_137
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 9B24|1|Y|A|2162, 9B24|1|Y|U|2168, 9B24|1|Y|U|2187
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B24_137 not in the Motif Atlas
- Homologous match to IL_5J7L_319
- Geometric discrepancy: 0.1769
- The information below is about IL_5J7L_319
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
9B24|1|Y|C|2158
9B24|1|Y|G|2159
9B24|1|Y|A|2160
9B24|1|Y|A|2161
9B24|1|Y|A|2162
9B24|1|Y|U|2163
9B24|1|Y|U|2164
9B24|1|Y|C|2165
9B24|1|Y|C|2166
9B24|1|Y|U|2167
9B24|1|Y|U|2168
9B24|1|Y|G|2169
*
9B24|1|Y|C|2185
9B24|1|Y|C|2186
9B24|1|Y|U|2187
9B24|1|Y|G|2188
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: